STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJG24407.1Aspartate aminotransferase. (395 aa)    
Predicted Functional Partners:
OJG24408.1
Hypothetical protein.
  
  
 0.920
AsnB
Asparagine synthase (glutamine-hydrolyzing).
  
 
 0.919
OJG20640.1
L-asparaginase.
    
 0.916
asnS
asparaginyl-tRNA synthetase 2.
  
  
 0.888
dinG
Hypothetical protein; 3'-5' exonuclease.
  
  
 0.651
OJG24115.1
Hypothetical protein.
 
 
 0.514
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.501
OJG21024.1
Hypothetical protein.
  
  
 0.488
ldh-2
L-lactate dehydrogenase 1; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 
 0.488
OJG22433.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.482
Your Current Organism:
Enterococcus avium
NCBI taxonomy Id: 33945
Other names: ATCC 14025, CCUG 7983, CIP 103019, DSM 20679, E. avium, JCM 8722, LMG 10744, LMG:10744, NBRC 100477, NCDO 2369, NCIMB 702369, NCTC 9938, Streptococcus avium, strain Guthof E6844
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