Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HolB | OJG24413.1 | RU95_GL000104 | RU95_GL000099 | DNA polymerase III, delta subunit. | Hypothetical protein. | 0.723 |
HolB | OJG24414.1 | RU95_GL000104 | RU95_GL000100 | DNA polymerase III, delta subunit. | Hypothetical protein. | 0.718 |
HolB | OJG24416.1 | RU95_GL000104 | RU95_GL000102 | DNA polymerase III, delta subunit. | DNA replication initiation control protein YabA; Involved in initiation control of chromosome replication. Belongs to the YabA family. | 0.946 |
HolB | OJG24417.1 | RU95_GL000104 | RU95_GL000103 | DNA polymerase III, delta subunit. | Stage 0 sporulation family protein. | 0.926 |
HolB | OJG24419.1 | RU95_GL000104 | RU95_GL000105 | DNA polymerase III, delta subunit. | Hypothetical protein. | 0.939 |
HolB | rsmI | RU95_GL000104 | RU95_GL000101 | DNA polymerase III, delta subunit. | 16S rRNA (-2-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.827 |
HolB | tmk | RU95_GL000104 | RU95_GL000106 | DNA polymerase III, delta subunit. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.968 |
OJG16985.1 | OJG21024.1 | RU95_GL003313 | RU95_GL001654 | Hypothetical protein. | Hypothetical protein. | 0.910 |
OJG16985.1 | OJG24413.1 | RU95_GL003313 | RU95_GL000099 | Hypothetical protein. | Hypothetical protein. | 0.976 |
OJG21024.1 | OJG16985.1 | RU95_GL001654 | RU95_GL003313 | Hypothetical protein. | Hypothetical protein. | 0.910 |
OJG21024.1 | OJG24413.1 | RU95_GL001654 | RU95_GL000099 | Hypothetical protein. | Hypothetical protein. | 0.864 |
OJG21024.1 | OJG24414.1 | RU95_GL001654 | RU95_GL000100 | Hypothetical protein. | Hypothetical protein. | 0.923 |
OJG21024.1 | argB | RU95_GL001654 | RU95_GL002446 | Hypothetical protein. | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.840 |
OJG24413.1 | HolB | RU95_GL000099 | RU95_GL000104 | Hypothetical protein. | DNA polymerase III, delta subunit. | 0.723 |
OJG24413.1 | OJG16985.1 | RU95_GL000099 | RU95_GL003313 | Hypothetical protein. | Hypothetical protein. | 0.976 |
OJG24413.1 | OJG21024.1 | RU95_GL000099 | RU95_GL001654 | Hypothetical protein. | Hypothetical protein. | 0.864 |
OJG24413.1 | OJG24414.1 | RU95_GL000099 | RU95_GL000100 | Hypothetical protein. | Hypothetical protein. | 0.997 |
OJG24413.1 | OJG24416.1 | RU95_GL000099 | RU95_GL000102 | Hypothetical protein. | DNA replication initiation control protein YabA; Involved in initiation control of chromosome replication. Belongs to the YabA family. | 0.736 |
OJG24413.1 | OJG24417.1 | RU95_GL000099 | RU95_GL000103 | Hypothetical protein. | Stage 0 sporulation family protein. | 0.736 |
OJG24413.1 | OJG24419.1 | RU95_GL000099 | RU95_GL000105 | Hypothetical protein. | Hypothetical protein. | 0.719 |
page 1 of 4