Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG21514.1 | OJG21524.1 | RU95_GL001357 | RU95_GL001367 | LacI family transcriptional regulator. | 16S rRNA small subunit methyltransferase C. | 0.646 |
OJG21524.1 | OJG21514.1 | RU95_GL001367 | RU95_GL001357 | 16S rRNA small subunit methyltransferase C. | LacI family transcriptional regulator. | 0.646 |
OJG21524.1 | OJG21525.1 | RU95_GL001367 | RU95_GL001368 | 16S rRNA small subunit methyltransferase C. | Hypothetical protein. | 0.902 |
OJG21524.1 | OJG21526.1 | RU95_GL001367 | RU95_GL001369 | 16S rRNA small subunit methyltransferase C. | Hypothetical protein. | 0.670 |
OJG21524.1 | OJG21618.1 | RU95_GL001367 | RU95_GL001141 | 16S rRNA small subunit methyltransferase C. | Hypothetical protein. | 0.597 |
OJG21524.1 | coaA | RU95_GL001367 | RU95_GL001370 | 16S rRNA small subunit methyltransferase C. | Pantothenate kinase. | 0.769 |
OJG21524.1 | obg | RU95_GL001367 | RU95_GL002482 | 16S rRNA small subunit methyltransferase C. | GTPase obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.596 |
OJG21524.1 | rplA | RU95_GL001367 | RU95_GL002814 | 16S rRNA small subunit methyltransferase C. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.554 |
OJG21524.1 | rplJ | RU95_GL001367 | RU95_GL002815 | 16S rRNA small subunit methyltransferase C. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.568 |
OJG21524.1 | rplL | RU95_GL001367 | RU95_GL002816 | 16S rRNA small subunit methyltransferase C. | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.555 |
OJG21524.1 | trmD | RU95_GL001367 | RU95_GL001436 | 16S rRNA small subunit methyltransferase C. | tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.604 |
OJG21525.1 | OJG21524.1 | RU95_GL001368 | RU95_GL001367 | Hypothetical protein. | 16S rRNA small subunit methyltransferase C. | 0.902 |
OJG21525.1 | OJG21526.1 | RU95_GL001368 | RU95_GL001369 | Hypothetical protein. | Hypothetical protein. | 0.670 |
OJG21525.1 | coaA | RU95_GL001368 | RU95_GL001370 | Hypothetical protein. | Pantothenate kinase. | 0.739 |
OJG21526.1 | OJG21524.1 | RU95_GL001369 | RU95_GL001367 | Hypothetical protein. | 16S rRNA small subunit methyltransferase C. | 0.670 |
OJG21526.1 | OJG21525.1 | RU95_GL001369 | RU95_GL001368 | Hypothetical protein. | Hypothetical protein. | 0.670 |
OJG21526.1 | coaA | RU95_GL001369 | RU95_GL001370 | Hypothetical protein. | Pantothenate kinase. | 0.462 |
OJG21618.1 | OJG21524.1 | RU95_GL001141 | RU95_GL001367 | Hypothetical protein. | 16S rRNA small subunit methyltransferase C. | 0.597 |
coaA | OJG21524.1 | RU95_GL001370 | RU95_GL001367 | Pantothenate kinase. | 16S rRNA small subunit methyltransferase C. | 0.769 |
coaA | OJG21525.1 | RU95_GL001370 | RU95_GL001368 | Pantothenate kinase. | Hypothetical protein. | 0.739 |
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