Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG21024.1 | OJG21411.1 | RU95_GL001654 | RU95_GL001421 | Hypothetical protein. | Hypothetical protein. | 0.495 |
OJG21409.1 | OJG21410.1 | RU95_GL001419 | RU95_GL001420 | Hypothetical protein. | Two-component system response regulator receiver protein. | 0.998 |
OJG21409.1 | OJG21411.1 | RU95_GL001419 | RU95_GL001421 | Hypothetical protein. | Hypothetical protein. | 0.604 |
OJG21409.1 | OJG21412.1 | RU95_GL001419 | RU95_GL001422 | Hypothetical protein. | Transcriptional regulator; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.539 |
OJG21409.1 | ffh | RU95_GL001419 | RU95_GL001423 | Hypothetical protein. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.519 |
OJG21410.1 | OJG21409.1 | RU95_GL001420 | RU95_GL001419 | Two-component system response regulator receiver protein. | Hypothetical protein. | 0.998 |
OJG21410.1 | OJG21411.1 | RU95_GL001420 | RU95_GL001421 | Two-component system response regulator receiver protein. | Hypothetical protein. | 0.825 |
OJG21410.1 | OJG21412.1 | RU95_GL001420 | RU95_GL001422 | Two-component system response regulator receiver protein. | Transcriptional regulator; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.827 |
OJG21410.1 | ffh | RU95_GL001420 | RU95_GL001423 | Two-component system response regulator receiver protein. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.830 |
OJG21411.1 | OJG21024.1 | RU95_GL001421 | RU95_GL001654 | Hypothetical protein. | Hypothetical protein. | 0.495 |
OJG21411.1 | OJG21409.1 | RU95_GL001421 | RU95_GL001419 | Hypothetical protein. | Hypothetical protein. | 0.604 |
OJG21411.1 | OJG21410.1 | RU95_GL001421 | RU95_GL001420 | Hypothetical protein. | Two-component system response regulator receiver protein. | 0.825 |
OJG21411.1 | OJG21412.1 | RU95_GL001421 | RU95_GL001422 | Hypothetical protein. | Transcriptional regulator; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.902 |
OJG21411.1 | OJG21504.1 | RU95_GL001421 | RU95_GL001347 | Hypothetical protein. | Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. | 0.589 |
OJG21411.1 | OJG22087.1 | RU95_GL001421 | RU95_GL000725 | Hypothetical protein. | Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. | 0.530 |
OJG21411.1 | ddl | RU95_GL001421 | RU95_GL001721 | Hypothetical protein. | D-Ala:D-Ala ligase Ddl; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.659 |
OJG21411.1 | ffh | RU95_GL001421 | RU95_GL001423 | Hypothetical protein. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.888 |
OJG21411.1 | murQ | RU95_GL001421 | RU95_GL002825 | Hypothetical protein. | N-acetylmuramic acid 6-phosphate etherase 2; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. | 0.408 |
OJG21412.1 | OJG21409.1 | RU95_GL001422 | RU95_GL001419 | Transcriptional regulator; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Hypothetical protein. | 0.539 |
OJG21412.1 | OJG21410.1 | RU95_GL001422 | RU95_GL001420 | Transcriptional regulator; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Two-component system response regulator receiver protein. | 0.827 |
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