Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG17647.1 | OJG21055.1 | RU95_GL002832 | RU95_GL001685 | Hypothetical protein. | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | 0.646 |
OJG21053.1 | OJG21055.1 | RU95_GL001683 | RU95_GL001685 | Hypothetical protein. | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | 0.742 |
OJG21053.1 | efp-2 | RU95_GL001683 | RU95_GL001684 | Hypothetical protein. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.811 |
OJG21053.1 | nusB | RU95_GL001683 | RU95_GL001682 | Hypothetical protein. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.918 |
OJG21055.1 | OJG17647.1 | RU95_GL001685 | RU95_GL002832 | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | Hypothetical protein. | 0.646 |
OJG21055.1 | OJG21053.1 | RU95_GL001685 | RU95_GL001683 | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | Hypothetical protein. | 0.742 |
OJG21055.1 | OJG21056.1 | RU95_GL001685 | RU95_GL001686 | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | General stress protein GlsB. | 0.576 |
OJG21055.1 | OJG21970.1 | RU95_GL001685 | RU95_GL000813 | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | Peptidase T-like protein. | 0.645 |
OJG21055.1 | OJG22880.1 | RU95_GL001685 | RU95_GL004057 | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | Hypothetical protein. | 0.633 |
OJG21055.1 | efp-2 | RU95_GL001685 | RU95_GL001684 | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.893 |
OJG21055.1 | hisS | RU95_GL001685 | RU95_GL000568 | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | histidyl-tRNA synthetase. | 0.545 |
OJG21055.1 | ileS | RU95_GL001685 | RU95_GL001657 | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.539 |
OJG21055.1 | nusB | RU95_GL001685 | RU95_GL001682 | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.752 |
OJG21055.1 | pepT | RU95_GL001685 | RU95_GL001078 | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. | 0.682 |
OJG21056.1 | OJG21055.1 | RU95_GL001686 | RU95_GL001685 | General stress protein GlsB. | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | 0.576 |
OJG21056.1 | efp-2 | RU95_GL001686 | RU95_GL001684 | General stress protein GlsB. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.419 |
OJG21970.1 | OJG21055.1 | RU95_GL000813 | RU95_GL001685 | Peptidase T-like protein. | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | 0.645 |
OJG22880.1 | OJG21055.1 | RU95_GL004057 | RU95_GL001685 | Hypothetical protein. | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | 0.633 |
efp-2 | OJG21053.1 | RU95_GL001684 | RU95_GL001683 | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Hypothetical protein. | 0.811 |
efp-2 | OJG21055.1 | RU95_GL001684 | RU95_GL001685 | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | xaa-Pro dipeptidase; Belongs to the peptidase M24B family. | 0.893 |
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