Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OJG23860.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
OJG23859.1
Hypothetical protein.
 
     0.958
OJG23862.1
Cysteine desulfurase.
       0.772
SelB
Selenocysteine-specific translation elongation factor.
 
     0.769
OJG23864.1
Hypothetical protein.
       0.709
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
  
    0.650
YedF
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
     0.611
OJG23877.1
Hypothetical protein.
 
     0.564
OJG23878.1
Hypothetical protein.
 
     0.550
OJG23873.1
Hypothetical protein.
 
     0.533
PrdB
Hypothetical protein.
 
     0.515
Your Current Organism:
Enterococcus avium
NCBI taxonomy Id: 33945
Other names: ATCC 14025, CCUG 7983, CIP 103019, DSM 20679, E. avium, JCM 8722, LMG 10744, LMG:10744, NBRC 100477, NCDO 2369, NCIMB 702369, NCTC 9938, Streptococcus avium, strain Guthof E6844
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