Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG16845.1 | OJG16846.1 | RU95_GL003557 | RU95_GL003558 | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | TIGR02254 family HAD hydrolase. | 0.895 |
OJG16845.1 | OJG19094.1 | RU95_GL003557 | RU95_GL002462 | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Methylase; Belongs to the methyltransferase superfamily. | 0.520 |
OJG16845.1 | OJG21327.1 | RU95_GL003557 | RU95_GL001501 | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Hypothetical protein. | 0.535 |
OJG16845.1 | RsmB | RU95_GL003557 | RU95_GL002751 | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.486 |
OJG16845.1 | Xth | RU95_GL003557 | RU95_GL003279 | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Exodeoxyribonuclease III. | 0.599 |
OJG16845.1 | cmk | RU95_GL003557 | RU95_GL002511 | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.661 |
OJG16845.1 | der | RU95_GL003557 | RU95_GL002509 | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.776 |
OJG16845.1 | rplY | RU95_GL003557 | RU95_GL003556 | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.674 |
OJG16845.1 | scpB | RU95_GL003557 | RU95_GL002518 | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.553 |
OJG16845.1 | udk | RU95_GL003557 | RU95_GL003559 | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Uridine kinase. | 0.859 |
OJG16846.1 | OJG16845.1 | RU95_GL003558 | RU95_GL003557 | TIGR02254 family HAD hydrolase. | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.895 |
OJG16846.1 | rplY | RU95_GL003558 | RU95_GL003556 | TIGR02254 family HAD hydrolase. | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.631 |
OJG16846.1 | udk | RU95_GL003558 | RU95_GL003559 | TIGR02254 family HAD hydrolase. | Uridine kinase. | 0.879 |
OJG19094.1 | OJG16845.1 | RU95_GL002462 | RU95_GL003557 | Methylase; Belongs to the methyltransferase superfamily. | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.520 |
OJG19094.1 | OJG21327.1 | RU95_GL002462 | RU95_GL001501 | Methylase; Belongs to the methyltransferase superfamily. | Hypothetical protein. | 0.757 |
OJG19094.1 | RsmB | RU95_GL002462 | RU95_GL002751 | Methylase; Belongs to the methyltransferase superfamily. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.606 |
OJG19094.1 | Xth | RU95_GL002462 | RU95_GL003279 | Methylase; Belongs to the methyltransferase superfamily. | Exodeoxyribonuclease III. | 0.476 |
OJG19094.1 | der | RU95_GL002462 | RU95_GL002509 | Methylase; Belongs to the methyltransferase superfamily. | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.460 |
OJG21327.1 | OJG16845.1 | RU95_GL001501 | RU95_GL003557 | Hypothetical protein. | 16S rRNA pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.535 |
OJG21327.1 | OJG19094.1 | RU95_GL001501 | RU95_GL002462 | Hypothetical protein. | Methylase; Belongs to the methyltransferase superfamily. | 0.757 |
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