Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG16525.1 | OJG16528.1 | RU95_GL003585 | RU95_GL003588 | LacI family transcriptional regulator. | Ribose uptake protein. | 0.577 |
OJG16525.1 | rbsD | RU95_GL003585 | RU95_GL003587 | LacI family transcriptional regulator. | D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. | 0.887 |
OJG16525.1 | rbsK-2 | RU95_GL003585 | RU95_GL003586 | LacI family transcriptional regulator. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.816 |
OJG16528.1 | OJG16525.1 | RU95_GL003588 | RU95_GL003585 | Ribose uptake protein. | LacI family transcriptional regulator. | 0.577 |
OJG16528.1 | OJG16529.1 | RU95_GL003588 | RU95_GL003589 | Ribose uptake protein. | Hypothetical protein. | 0.527 |
OJG16528.1 | OJG16530.1 | RU95_GL003588 | RU95_GL003590 | Ribose uptake protein. | Hypothetical protein. | 0.441 |
OJG16528.1 | OJG21801.1 | RU95_GL003588 | RU95_GL001000 | Ribose uptake protein. | Hypothetical protein. | 0.503 |
OJG16528.1 | YjeM | RU95_GL003588 | RU95_GL001113 | Ribose uptake protein. | Hypothetical protein. | 0.428 |
OJG16528.1 | rbsD | RU95_GL003588 | RU95_GL003587 | Ribose uptake protein. | D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. | 0.937 |
OJG16528.1 | rbsK-2 | RU95_GL003588 | RU95_GL003586 | Ribose uptake protein. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.787 |
OJG16529.1 | OJG16528.1 | RU95_GL003589 | RU95_GL003588 | Hypothetical protein. | Ribose uptake protein. | 0.527 |
OJG16529.1 | OJG16530.1 | RU95_GL003589 | RU95_GL003590 | Hypothetical protein. | Hypothetical protein. | 0.856 |
OJG16529.1 | rbsD | RU95_GL003589 | RU95_GL003587 | Hypothetical protein. | D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. | 0.497 |
OJG16529.1 | rbsK-2 | RU95_GL003589 | RU95_GL003586 | Hypothetical protein. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.434 |
OJG16530.1 | OJG16528.1 | RU95_GL003590 | RU95_GL003588 | Hypothetical protein. | Ribose uptake protein. | 0.441 |
OJG16530.1 | OJG16529.1 | RU95_GL003590 | RU95_GL003589 | Hypothetical protein. | Hypothetical protein. | 0.856 |
OJG16530.1 | rbsD | RU95_GL003590 | RU95_GL003587 | Hypothetical protein. | D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. | 0.428 |
OJG21801.1 | OJG16528.1 | RU95_GL001000 | RU95_GL003588 | Hypothetical protein. | Ribose uptake protein. | 0.503 |
YjeM | OJG16528.1 | RU95_GL001113 | RU95_GL003588 | Hypothetical protein. | Ribose uptake protein. | 0.428 |
rbsD | OJG16525.1 | RU95_GL003587 | RU95_GL003585 | D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. | LacI family transcriptional regulator. | 0.887 |
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