STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOG27038.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)    
Predicted Functional Partners:
AOG27161.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.535
AOG27039.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.490
AOG27040.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.454
AOG27041.1
Pyridoxal kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pyridoxine kinase family.
       0.454
AOG27042.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.454
Your Current Organism:
Lactobacillus johnsonii
NCBI taxonomy Id: 33959
Other names: ATCC 33200, CCUG 30725, CIP 103620, DSM 10533, JCM 2012, L. johnsonii, VPI 7960
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.