Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
KZL43238.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)    
Predicted Functional Partners:
KZL42537.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.923
KZL41086.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.886
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.859
KZL43236.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.818
KZL42541.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.771
KZL43239.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.755
KZL35914.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.748
KZL42944.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.722
KZL38852.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.716
KZL39383.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.691
Your Current Organism:
Lactobacillus collinoides
NCBI taxonomy Id: 33960
Other names: ATCC 27612, CCUG 32259, CIP 103008, DSM 20515, L. collinoides, LMG 9194, LMG:9194
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