STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KZL43093.1LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)    
Predicted Functional Partners:
KZL43115.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.986
KZL42385.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.969
KZL42915.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.927
KZL42861.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.915
KZL42750.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.597
KZL39047.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.513
KZL43092.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.490
KZL42871.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.469
KZL42843.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.469
KZL38282.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.469
Your Current Organism:
Lactobacillus collinoides
NCBI taxonomy Id: 33960
Other names: ATCC 27612, CCUG 32259, CIP 103008, DSM 20515, L. collinoides, LMG 9194, LMG:9194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.