Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KZL42786.1L-alanine-DL-glutamate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)    
Predicted Functional Partners:
KZL42736.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.907
KZL42737.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.890
KZL43354.1
acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.609
menE
O-succinylbenzoic acid--CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily.
  
 
  0.609
KZL43322.1
D-aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.594
menB
Dihydroxynaphthoic acid synthetase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).
    
 0.589
argR-2
ArgR family transcriptional regulator; Regulates arginine biosynthesis genes.
       0.491
KZL42739.1
Amino acid APC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.444
KZL40110.1
Macro domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.427
KZL42740.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.409
Your Current Organism:
Lactobacillus collinoides
NCBI taxonomy Id: 33960
Other names: ATCC 27612, CCUG 32259, CIP 103008, DSM 20515, L. collinoides, LMG 9194, LMG:9194
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