Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KZL41554.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)    
Predicted Functional Partners:
hpf
Sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
     
 0.726
KZL41553.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.723
KZL41552.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.704
KZL42918.1
Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.497
KZL41019.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.485
KZL42980.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.420
KZL42648.1
Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.420
KZL41079.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.420
KZL41160.1
RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.413
recA
Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
   0.408
Your Current Organism:
Lactobacillus collinoides
NCBI taxonomy Id: 33960
Other names: ATCC 27612, CCUG 32259, CIP 103008, DSM 20515, L. collinoides, LMG 9194, LMG:9194
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