STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerSSite-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (363 aa)    
Predicted Functional Partners:
KZL41059.1
ATP-dependent protease; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
    0.659
hslU
ATP-dependent protease; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
  
  
 0.539
KZL41552.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.479
KZL43206.1
Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.470
whiA
Sporulation regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.462
KZL39401.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.457
KZL37130.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.454
KZL40134.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.452
KZL39400.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.452
KZL37592.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
Your Current Organism:
Lactobacillus collinoides
NCBI taxonomy Id: 33960
Other names: ATCC 27612, CCUG 32259, CIP 103008, DSM 20515, L. collinoides, LMG 9194, LMG:9194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.