Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KZL40119.1Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)    
Predicted Functional Partners:
KZL35709.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.870
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.805
KZL35711.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.551
KZL36674.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.511
KZL36675.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.511
KZL40379.1
NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.502
KZL42734.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.464
KZL40108.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.464
KZL35728.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.440
KZL40140.1
N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.435
Your Current Organism:
Lactobacillus collinoides
NCBI taxonomy Id: 33960
Other names: ATCC 27612, CCUG 32259, CIP 103008, DSM 20515, L. collinoides, LMG 9194, LMG:9194
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