Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KZL37752.1Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)    
Predicted Functional Partners:
rexB
ATP-dependent helicase; ATP-dependent DNA helicase.
  
 
 0.836
KZL37731.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.473
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.439
KZL43257.1
Nickase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.429
recD2
Exodeoxyribonuclease V subunit alpha; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
  
   0.429
KZL42709.1
Nickase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.429
KZL42320.1
Nickase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.429
KZL39181.1
Nickase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.429
KZL37978.1
Nickase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.429
KZL35822.1
MobA/MobL protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.429
Your Current Organism:
Lactobacillus collinoides
NCBI taxonomy Id: 33960
Other names: ATCC 27612, CCUG 32259, CIP 103008, DSM 20515, L. collinoides, LMG 9194, LMG:9194
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