Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KZL35514.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)    
Predicted Functional Partners:
KZL43066.1
Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.787
KZL38875.1
Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.787
KZL35513.1
Replication protein RepB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.686
KZL42790.1
3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.625
KZL43284.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.611
KZL42110.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.596
KZL39192.1
Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.587
KZL40007.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.557
KZL43124.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.545
KZL35548.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.544
Your Current Organism:
Lactobacillus collinoides
NCBI taxonomy Id: 33960
Other names: ATCC 27612, CCUG 32259, CIP 103008, DSM 20515, L. collinoides, LMG 9194, LMG:9194
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