STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0106PFAM: glycosyl transferase group 1; KEGG: msu:MS1496 RfaG protein. (385 aa)    
Predicted Functional Partners:
Asuc_0107
PFAM: glycosyl transferase group 1; KEGG: msu:MS1497 RfaG protein.
 
     0.916
Asuc_0105
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: msu:MS1495 RfbX protein.
 
  
 0.872
Asuc_0102
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: msu:MS1492 WcaJ protein.
 
  
 0.857
Asuc_0108
Glutamine--scyllo-inositol transaminase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: msu:MS1498 WecE protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.834
Asuc_0101
PFAM: protein of unknown function DUF201; KEGG: msu:MS1491 hypothetical protein.
 
     0.806
Asuc_0104
PFAM: glycosyl transferase group 1; KEGG: msu:MS1494 RfaG protein.
  
  
 0.791
Asuc_0109
PFAM: transferase hexapeptide repeat containing protein; KEGG: msu:MS1499 WbbJ protein.
 
  
 0.790
Asuc_0100
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: msu:MS1490 hypothetical protein.
  
 
 0.782
Asuc_0103
PFAM: O-antigen polymerase; KEGG: msu:MS1493 hypothetical protein.
       0.773
Asuc_0099
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: msu:MS1489 WecE protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.755
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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