STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0110PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: msu:MS1500 MviM protein. (316 aa)    
Predicted Functional Partners:
Asuc_0108
Glutamine--scyllo-inositol transaminase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: msu:MS1498 WecE protein; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.977
Asuc_0111
PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: msu:MS1501 WecC protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 
 0.977
Asuc_0109
PFAM: transferase hexapeptide repeat containing protein; KEGG: msu:MS1499 WbbJ protein.
 
  
 0.881
Asuc_0099
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: msu:MS1489 WecE protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.676
Asuc_0359
PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: msu:MS1529 IolE protein.
  
  
 0.563
Asuc_1582
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pmu:PM1647 unknown.
  
  
 0.558
Asuc_0104
PFAM: glycosyl transferase group 1; KEGG: msu:MS1494 RfaG protein.
 
  
 0.556
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: msu:MS1543 lysyl-tRNA synthetase class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.529
Asuc_0826
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: vfi:VF0166 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.468
Asuc_0105
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: msu:MS1495 RfbX protein.
  
  
 0.453
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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