STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0116Kmt1; KEGG: pmu:PM1361 kmt1. (598 aa)    
Predicted Functional Partners:
Asuc_0118
PFAM: phospholipase/Carboxylesterase; KEGG: pmu:PM1358 hypothetical T. maritima.
 
     0.890
Asuc_0117
PFAM: cyclase family protein; KEGG: hin:HI1016 hypothetical protein.
 
     0.882
Asuc_0797
KEGG: hit:NTHI1418 putative ABC-type Co2+ transport system, periplasmic component.
  
     0.761
Asuc_2041
PFAM: Patatin; KEGG: hdu:HD0066 hypothetical protein.
  
     0.737
Asuc_0855
KEGG: msu:MS1114 hypothetical protein.
 
     0.732
Asuc_1665
PFAM: YHS domain protein; KEGG: pmu:PM0451 hypothetical Y.pestis.
 
     0.724
Asuc_1333
PFAM: glycosyl transferase family 25; KEGG: msu:MS0905 glycosyltransferase involved in LPS biosynthesis.
  
     0.722
Asuc_0735
KEGG: msu:MS0344 hypothetical protein.
  
     0.704
Asuc_1137
PFAM: porin Gram-negative type; KEGG: msu:MS1337 OmpC protein.
  
    0.685
Asuc_1221
PFAM: DNA N-6-adenine-methyltransferase; KEGG: sgl:SG0744 phage DNA methyltransferase.
  
     0.664
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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