STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCPFAM: Glucuronate isomerase; KEGG: msu:MS0544 glucuronate isomerase. (467 aa)    
Predicted Functional Partners:
Asuc_0371
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: tte:TTE1940 mannitol-1-phosphate/altronate dehydrogenase.
 
 
 0.971
Asuc_0155
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: msu:MS0529 mannitol-1-phosphate/altronate dehydrogenases.
 
 
 0.968
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.939
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.925
Asuc_0369
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bsu:BG13207 similar to alcohol dehydrogenase.
     
 0.902
Asuc_0234
TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: msu:MS0046 ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
     
 0.816
Asuc_0159
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: msu:MS0525 Tdh protein.
     
 0.804
Asuc_0149
Alpha-glucosidase; PFAM: glycoside hydrolase family 31; KEGG: msu:MS0539 alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.
 
     0.569
Asuc_0146
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: msu:MS0542 DctP protein.
 
   
 0.566
Asuc_0154
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: msu:MS0530 altronate dehydratase.
 
  
 0.476
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.