STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0175PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: yps:YPTB0812 ABC transporter, periplasmic sugar binding protein. (310 aa)    
Predicted Functional Partners:
Asuc_0860
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: msu:MS1730 sensory transduction histidine kinases.
  
 
 0.992
Asuc_0172
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: eca:ECA1949 putative sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.987
Asuc_0173
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yen:YE0820 putative sugar ABC transporter, ATP-binding protein.
 
 
 0.942
Asuc_0174
KEGG: yen:YE0819 putative lipoprotein.
 
    0.903
aptB
Transketolase domain protein; Involved in catabolism of D-apiose. Catalyzes the transfer of the glycolaldehyde group from apulose-4-phosphate to D-glyceraldehyde 3-phosphate, generating dihydroxyacetone phosphate and D-xylulose-5- phosphate.
 
  
 0.881
aptA
Transketolase domain protein; Involved in catabolism of D-apiose. Catalyzes the transfer of the glycolaldehyde group from apulose-4-phosphate to D-glyceraldehyde 3-phosphate, generating dihydroxyacetone phosphate and D-xylulose-5- phosphate.
 
   
 0.866
rbsD
RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.838
Asuc_0196
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: pmu:PM0154 ribose transport system permease protein.
 
 0.829
Asuc_0083
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: msu:MS1610 ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 0.800
Asuc_0491
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: msu:MS0061 ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 0.765
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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