STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0236Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: pmu:PM0762 transcription regulator, putative. (248 aa)    
Predicted Functional Partners:
Asuc_0235
TIGRFAM: putative hexulose-6-phosphate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: msu:MS0047 SgaU protein.
 
   
 0.716
Asuc_0234
TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: msu:MS0046 ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
  
  
 0.675
Asuc_0237
KEGG: msu:MS0023 predicted Zn-dependent hydrolases of the beta-lactamase fold.
 
     0.588
Asuc_0086
1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: msu:MS2179 fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family.
  
  
 0.479
Asuc_0238
Putative sugar-specific permease SgaT/UlaA; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; putative sugar-specific permease SgaT/UlaA; KEGG: msu:MS0022 uncharacterized BCR.
 
   
 0.446
Asuc_0085
TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: msu:MS2178 phosphotransferase system, fructose-specific IIC component.
  
  
 0.414
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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