STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0243PFAM: protein of unknown function DUF541; KEGG: msu:MS2198 hypothetical protein. (232 aa)    
Predicted Functional Partners:
Asuc_0242
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: msu:MS2199 fKBP-type peptidyl-prolyl cis-trans isomerases 2.
       0.586
Asuc_1511
KEGG: msu:MS1538 TrxA protein.
  
     0.535
Asuc_0855
KEGG: msu:MS1114 hypothetical protein.
  
     0.485
Asuc_0955
KEGG: msu:MS0759 hypothetical protein.
  
     0.466
Asuc_0797
KEGG: hit:NTHI1418 putative ABC-type Co2+ transport system, periplasmic component.
  
     0.455
Asuc_1093
KEGG: msu:MS1332 hypothetical protein.
  
     0.446
rraB
Protein of unknown function DUF1260; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
       0.442
Asuc_0678
KEGG: msu:MS0323 WecD protein.
  
     0.404
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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