STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0293KEGG: hit:NTHI0559 competence protein F. (225 aa)    
Predicted Functional Partners:
Asuc_0566
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: hit:NTHI1157 smf.
 
 
 0.899
Asuc_1729
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: hit:NTHI0073 recombination protein 2.
 
  
 0.854
Asuc_0505
TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: hit:NTHI1282 competence protein ComM.
 
  
 0.832
Asuc_0013
PFAM: DNA repair protein RadC; KEGG: hso:HS_0144 DNA repair protein; Belongs to the UPF0758 family.
 
    0.729
Asuc_1569
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; Prephenate dehydrogenase; KEGG: msu:MS1102 prephenate dehydrogenase.
  
  
 0.642
Asuc_1103
TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: apl:APL_1756 N-acetylglucosamine-6-phosphate deacetylase.
  
    0.608
Asuc_1462
PFAM: protein of unknown function UPF0102; KEGG: hit:NTHI1958 predicted endonuclease distantly related to archaeal holliday junction resolvase; Belongs to the UPF0102 family.
 
    0.569
Asuc_0030
PFAM: phage integrase family protein; KEGG: bml:BMA10299_A1532 site-specific recombinase, phage integrase family.
   
    0.552
xerD
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.552
Asuc_0860
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: msu:MS1730 sensory transduction histidine kinases.
  
  
 0.516
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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