STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0299TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msu:MS1276 ABC-type amino acid transport system, permease component. (238 aa)    
Predicted Functional Partners:
Asuc_0298
PFAM: extracellular solute-binding protein family 3; KEGG: msu:MS1277 ABC-type amino acid transport system, periplasmic component; Belongs to the bacterial solute-binding protein 3 family.
 0.999
Asuc_0300
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msu:MS1275 ABC-type polar amino acid transport system, ATPase component.
 0.998
Asuc_1807
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: msu:MS0704 ABC-type amino acid transport system, periplasmic component.
 
 0.982
Asuc_0619
TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: msu:MS0220 ABC-type amino acid transport system, periplasmic component.
 
 0.940
Asuc_1949
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msu:MS1685 ABC-type polar amino acid transport system, ATPase component.
 
 0.940
Asuc_0620
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msu:MS0219 ABC-type polar amino acid transport system, ATPase component.
 
     0.815
Asuc_1948
PFAM: extracellular solute-binding protein family 3; KEGG: msu:MS1684 ABC-type amino acid transport system, periplasmic component.
 
 
 0.735
Asuc_1950
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msu:MS1686 ABC-type amino acid transport system, permease component.
 
 
 
0.641
Asuc_1338
Arogenate dehydratase; PFAM: extracellular solute-binding protein family 3; KEGG: msu:MS0900 ArtI protein.
 
 
 0.635
Asuc_0618
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msu:MS0221 ABC-type amino acid transport system, permease component.
 
 
 
0.521
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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