STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0358PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: msu:MS1530 ProP protein. (407 aa)    
Predicted Functional Partners:
Asuc_0359
PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: msu:MS1529 IolE protein.
 
  
 0.888
Asuc_0360
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: msu:MS1528 MviM protein.
 
     0.861
Asuc_0357
Alanine racemase; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: msu:MS1531 PurR protein.
     
 0.513
Asuc_0683
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: msu:MS0416 hypothetical protein.
  
    0.476
Asuc_0361
PFAM: adenylate cyclase class-I; KEGG: pmu:PM1811 adenylate cyclase; Belongs to the adenylyl cyclase class-1 family.
       0.458
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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