STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0450KEGG: hso:HS_1544 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Asuc_1055
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: msu:MS1560 hypothetical protein.
  
     0.766
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.722
Asuc_1713
PFAM: SNARE associated Golgi protein; KEGG: hit:NTHI1412 uncharacterized membrane-associated protein.
  
     0.577
gltS
Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
       0.500
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
       0.470
Asuc_1804
PFAM: NUDIX hydrolase; KEGG: msu:MS0709 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
 
     0.442
Asuc_1725
PFAM: protein of unknown function DUF937; KEGG: msu:MS0936 hypothetical protein.
  
     0.420
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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