STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0544PFAM: VacJ family lipoprotein; KEGG: msu:MS2239 surface lipoprotein. (249 aa)    
Predicted Functional Partners:
Asuc_0789
PFAM: toluene tolerance family protein; KEGG: msu:MS1710 uncharacterized periplasmic protein.
 
 
 
 0.872
Asuc_0788
PFAM: Mammalian cell entry related domain protein; KEGG: msu:MS1711 permease component of an ABC-transporter.
 
   
 0.811
Asuc_0543
PFAM: YfbU family protein; KEGG: pmu:PM1500 hypothetical E.coli; Belongs to the UPF0304 family.
       0.765
Asuc_1137
PFAM: porin Gram-negative type; KEGG: msu:MS1337 OmpC protein.
 
 
 
 0.553
Asuc_1912
TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: msu:MS0592 rod shape-determining protein.
  
     0.525
Asuc_0787
PFAM: protein of unknown function DUF140; KEGG: msu:MS1712 ABC-type toluene export system, permease component.
 
   
 0.499
Asuc_0061
PFAM: porin Gram-negative type; KEGG: hdu:HD1433 outer membrane protein P2 homolog.
   
 
 0.489
Asuc_1477
PFAM: porin Gram-negative type; KEGG: msu:MS0561 OmpC protein.
   
 
 0.489
mrdA
Peptidoglycan glycosyltransferase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
     0.476
Asuc_1784
MltA domain protein; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
 
     0.420
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.