STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0788PFAM: Mammalian cell entry related domain protein; KEGG: msu:MS1711 permease component of an ABC-transporter. (168 aa)    
Predicted Functional Partners:
Asuc_0787
PFAM: protein of unknown function DUF140; KEGG: msu:MS1712 ABC-type toluene export system, permease component.
 
 0.999
Asuc_0786
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msu:MS1713 uncharacterized ABC-type transport system, ATPase component.
 
 0.997
Asuc_0789
PFAM: toluene tolerance family protein; KEGG: msu:MS1710 uncharacterized periplasmic protein.
 
 0.995
Asuc_0790
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: msu:MS1709 STAS domain protein.
  
 0.964
Asuc_0544
PFAM: VacJ family lipoprotein; KEGG: msu:MS2239 surface lipoprotein.
 
   
 0.811
Asuc_0791
PFAM: BolA family protein; KEGG: msu:MS1708 BolA protein; Belongs to the BolA/IbaG family.
     
 0.649
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.619
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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