STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0946Putative prophage repressor; PFAM: peptidase S24 S26A and S26B; KEGG: msu:MS0831 hypothetical protein. (145 aa)    
Predicted Functional Partners:
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.878
Asuc_1333
PFAM: glycosyl transferase family 25; KEGG: msu:MS0905 glycosyltransferase involved in LPS biosynthesis.
  
     0.586
Asuc_1781
KEGG: hdu:HD0607 hypothetical protein.
  
     0.584
dinB
DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
  
 
 0.554
bamC
NlpBDapX family lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.551
Asuc_0884
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
  
 0.548
Asuc_1002
KEGG: msu:MS0844 hypothetical protein; Belongs to the UPF0319 family.
  
     0.542
Asuc_1314
PFAM: helix-turn-helix domain protein; KEGG: vfi:VF1469 transcriptional regulator, MerR family.
  
   
 0.501
Asuc_1788
Conserved hypothetical protein; KEGG: pmu:PM0964 hypothetical HI0939.
  
     0.490
Asuc_2111
KEGG: msu:MS1757 membrane protein.
  
     0.465
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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