STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0957PFAM: conserved hypothetical protein 1620; KEGG: msu:MS0761 hypothetical protein. (360 aa)    
Predicted Functional Partners:
Asuc_1759
PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: pmu:PM0910 hypothetical HI1637.
 
  
 0.945
Asuc_1983
PFAM: protein of unknown function DUF416; KEGG: msu:MS0184 hypothetical protein.
  
     0.676
Asuc_0958
PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: msu:MS0762 transcriptional regulator of aromatic amino acids metabolism.
     
 0.630
Asuc_0967
Peptidase U6 penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.597
Asuc_0932
DNA polymerase III psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.532
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.520
Asuc_0277
Lysophospholipase; PFAM: alpha/beta hydrolase fold; KEGG: hin:HI0645 lysophospholipase L2.
  
     0.501
Asuc_1259
PFAM: protein of unknown function DUF440; KEGG: msu:MS1016 hypothetical protein; Belongs to the UPF0263 family.
  
     0.492
Asuc_1112
PFAM: protein of unknown function DUF991; KEGG: hit:NTHI1471 hypothetical protein.
  
     0.457
rnb
Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction.
 
     0.455
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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