STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_0976Conserved hypothetical protein; KEGG: pmu:PM0367 hypothetical HI1626. (241 aa)    
Predicted Functional Partners:
Asuc_0855
KEGG: msu:MS1114 hypothetical protein.
  
     0.553
Asuc_1525
PFAM: extracellular solute-binding protein family 1; KEGG: msu:MS0580 PotD protein.
  
     0.519
Asuc_1333
PFAM: glycosyl transferase family 25; KEGG: msu:MS0905 glycosyltransferase involved in LPS biosynthesis.
  
     0.510
Asuc_1788
Conserved hypothetical protein; KEGG: pmu:PM0964 hypothetical HI0939.
  
     0.509
Asuc_1781
KEGG: hdu:HD0607 hypothetical protein.
  
     0.473
Asuc_1331
PFAM: polysaccharide pyruvyl transferase; KEGG: msu:MS0907 hypothetical protein.
  
     0.469
Asuc_0797
KEGG: hit:NTHI1418 putative ABC-type Co2+ transport system, periplasmic component.
  
     0.468
Asuc_2111
KEGG: msu:MS1757 membrane protein.
  
     0.467
bamC
NlpBDapX family lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.463
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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