STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1017TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: vpa:VPA1435 putative iron(III) compound receptor. (673 aa)    
Predicted Functional Partners:
Asuc_1018
PFAM: transport system permease protein; KEGG: msu:MS1203 BtuC protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.912
Asuc_1019
PFAM: periplasmic binding protein; KEGG: msu:MS1202 FecB protein.
 
   
 0.904
Asuc_1020
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msu:MS1201 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 
  
 0.893
Asuc_1173
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: msu:MS1315 outer membrane receptor proteins, mostly Fe transport.
  
     0.685
Asuc_2010
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.640
sfsA
PFAM: sugar fermentation stimulation protein; KEGG: msu:MS1230 sugar fermentation stimulation protein (uncharacterized); Belongs to the SfsA family.
       0.490
Asuc_0904
PFAM: transport system permease protein; ABC-3 protein; KEGG: mba:Mbar_A0466 Fe(III) dicitrate ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.479
menF
Isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate.
   
  
 0.422
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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