STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1220PFAM: replication P family protein; KEGG: ecv:APECO1_234 putative replication protein P of bacteriophage. (218 aa)    
Predicted Functional Partners:
Asuc_1221
PFAM: DNA N-6-adenine-methyltransferase; KEGG: sgl:SG0744 phage DNA methyltransferase.
     
 0.810
Asuc_1222
PFAM: protein of unknown function DUF1367; KEGG: yps:YPTB1800 conserved putative phage protein.
       0.768
Asuc_1223
PFAM: protein of unknown function DUF1364; KEGG: spt:SPA2402 hypothetical protein.
       0.537
Asuc_1224
Endodeoxyribonuclease RusA; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC; Belongs to the rusA family.
       0.537
Asuc_1225
KEGG: hso:HS_1393 hypothetical protein.
       0.471
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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