STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1256Hypothetical protein. (336 aa)    
Predicted Functional Partners:
Asuc_1254
PFAM: Fibronectin type III domain protein; Protein of unknown function DUF1983; KEGG: nmc:NMC0870 Neisseria meningitidis phage 2120; ORF 4.
       0.773
Asuc_1255
Hypothetical protein.
       0.773
Asuc_1257
Hypothetical protein.
       0.746
Asuc_1250
PFAM: phage minor tail family protein; KEGG: sec:SC0995 Gifsy-2 prophage probable minor tail protein.
       0.570
Asuc_1251
PFAM: phage minor tail protein L; KEGG: nmc:NMC0867 putative phage-related protein.
       0.570
Asuc_1252
PFAM: NLP/P60 protein; KEGG: stm:STM1046 probable tail assembly protein.
       0.570
Asuc_1253
PFAM: bacteriophage lambda tail assembly I; KEGG: stm:STM0923 putative phage tail assembly protein.
       0.570
Asuc_1249
TIGRFAM: phage tape measure protein; KEGG: hdu:HD1569 putative tail length tape measure protein.
       0.562
Asuc_1248
Hypothetical protein.
       0.445
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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