Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Asuc_1302PFAM: B3/4 domain protein; KEGG: lac:LBA0250 hypothetical protein. (237 aa)    
Predicted Functional Partners:
argS
TIGRFAM: arginyl-tRNA synthetase; KEGG: msu:MS1330 arginyl-tRNA synthetase.
      0.747
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: msu:MS1543 lysyl-tRNA synthetase class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
      0.620
Asuc_0217
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: msu:MS2252 lysine efflux permease.
  
    0.479
Asuc_1303
PFAM: Citrate transporter; KEGG: bha:BH0745 magnesium citrate secondary transporter.
       0.426
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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