STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1320SMART: regulatory protein ArsR; KEGG: lpn:lpg2723 transcriptional regulator. (103 aa)    
Predicted Functional Partners:
Asuc_1319
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rme:Rmet_5915 lysine exporter protein (LysE/YggA).
 
     0.658
Asuc_1034
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: plu:plu3824 copper-transporting P-type ATPase.
  
  
 0.629
Asuc_1324
PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: pfo:Pfl_1953 hypothetical protein.
 
   
 0.621
Asuc_1323
PFAM: beta-lactamase domain protein; KEGG: reh:H16_B0067 metal-dependent hydrolase of the beta-lactamase superfamily.
 
   
 0.612
Asuc_1321
PFAM: DSBA oxidoreductase; KEGG: msu:MS2007 FrnE protein.
  
    0.562
Asuc_1322
PFAM: phospholipase/Carboxylesterase; KEGG: mpt:Mpe_A0054 carboxylesterase.
       0.559
Asuc_0801
TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: msu:MS1703 aspartokinases; In the C-terminal section; belongs to the homoserine dehydrogenase family.
     
 0.411
Asuc_0139
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pmu:PM1569 tyrosine phosphatase, putative.
  
  
 0.409
fur
PFAM: ferric-uptake regulator; KEGG: msu:MS0859 Fur protein; Belongs to the Fur family.
  
  
 0.409
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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