STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1362Conserved hypothetical protein 156; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; conserved hypothetical protein 156; KEGG: msu:MS1247 hypothetical protein. (229 aa)    
Predicted Functional Partners:
Asuc_0543
PFAM: YfbU family protein; KEGG: pmu:PM1500 hypothetical E.coli; Belongs to the UPF0304 family.
  
     0.735
Asuc_1364
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pmu:PM0215 sensor protein, putative.
 
   
 0.701
Asuc_1112
PFAM: protein of unknown function DUF991; KEGG: hit:NTHI1471 hypothetical protein.
  
     0.634
Asuc_0628
TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: msu:MS1895 amino acid permeases.
  
     0.611
Asuc_1489
TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: msu:MS0977 SdaC protein.
  
     0.578
Asuc_1363
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pmu:PM0214 transcriptional regulatory protein, putative.
  
    0.558
Asuc_0707
PFAM: Polysulphide reductase NrfD; KEGG: msu:MS1816 formate-dependent nitrite reductase, membrane component.
  
     0.544
Asuc_1361
PFAM: protein of unknown function DUF1294; KEGG: msu:MS1294 hypothetical protein.
       0.519
Asuc_2111
KEGG: msu:MS1757 membrane protein.
  
     0.509
Asuc_0932
DNA polymerase III psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.504
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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