STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1475PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: msu:MS0562 IclR protein. (265 aa)    
Predicted Functional Partners:
Asuc_1474
TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: msu:MS0563 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
    0.576
Asuc_1473
PFAM: Ribose/galactose isomerase; KEGG: msu:MS0564 hypothetical protein.
 
     0.554
Asuc_0150
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: msu:MS0538 FadR protein.
  
  
 0.548
Asuc_1467
Oligogalacturonide lyase; KEGG: msu:MS1740 hypothetical protein.
 
   
 0.524
Asuc_1308
PFAM: Carboxymuconolactone decarboxylase; Cupin 2 conserved barrel domain protein; KEGG: msu:MS2158 hypothetical protein.
     
 0.413
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.