STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1554PFAM: protein of unknown function DUF535; KEGG: hso:HS_1361 hypothetical protein. (279 aa)    
Predicted Functional Partners:
Asuc_0735
KEGG: msu:MS0344 hypothetical protein.
  
     0.710
cmk
TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: pmu:PM0802 cytidylate kinase 1.
       0.701
Asuc_1844
PFAM: protein of unknown function DUF560; KEGG: hso:HS_0622 hypothetical protein.
  
     0.701
Asuc_2047
KEGG: hso:HS_0622 hypothetical protein.
  
     0.694
Asuc_1375
PFAM: glycosyl transferase family 25; KEGG: hdu:HD0472 lipooligosaccharide galactosyltransferase II.
  
     0.691
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription.
 
     0.602
Asuc_1333
PFAM: glycosyl transferase family 25; KEGG: msu:MS0905 glycosyltransferase involved in LPS biosynthesis.
  
     0.585
Asuc_2041
PFAM: Patatin; KEGG: hdu:HD0066 hypothetical protein.
  
     0.568
Asuc_1000
TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: pmu:PM0392 hypothetical HI1680.
  
     0.565
Asuc_0773
PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: bam:Bamb_3834 YadA C-terminal domain protein.
  
     0.547
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.