STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1616PFAM: LrgB family protein; KEGG: msu:MS1270 LrgB protein. (227 aa)    
Predicted Functional Partners:
Asuc_1617
PFAM: LrgA family protein; KEGG: msu:MS1271 putative effector of murein hydrolase LrgA.
 
  
 0.992
Asuc_1615
TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: msu:MS1269 dGTP triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily.
       0.792
Asuc_1618
PFAM: nuclease (SNase domain protein); KEGG: msu:MS1272 hypothetical protein.
       0.581
Asuc_1619
PFAM: aminotransferase class V; KEGG: msu:MS1273 selenocysteine lyase.
       0.566
Asuc_1620
PFAM: Fe-S metabolism associated SufE; KEGG: pmu:PM0883 hypothetical HI1293/94.
       0.505
Asuc_1621
KEGG: yps:YPTB3260 hypothetical protein.
       0.479
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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