STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1663PFAM: iron permease FTR1; KEGG: pmu:PM0453 high-affinity iron transporter. (641 aa)    
Predicted Functional Partners:
Asuc_1664
Conserved hypothetical protein; KEGG: pmu:PM0452 hypothetical Y.pestis.
 
  
 0.944
Asuc_1665
PFAM: YHS domain protein; KEGG: pmu:PM0451 hypothetical Y.pestis.
 
  
 0.909
Asuc_1666
PFAM: protein of unknown function DUF214; KEGG: pmu:PM0450 hypothetical ABC transporter.
 
     0.860
Asuc_1667
PFAM: protein of unknown function DUF214; KEGG: pmu:PM0449 hypothetical Y. pestis.
 
     0.859
Asuc_1668
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmu:PM0448 hypothetical Y. pestis.
 
     0.756
Asuc_1669
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pmu:PM0447 cytochrome c biogenesis protein, putative.
 
   
 0.746
Asuc_0116
Kmt1; KEGG: pmu:PM1361 kmt1.
  
     0.601
Asuc_0919
PFAM: protein of unknown function DUF6 transmembrane; KEGG: msu:MS1595 RhaT protein.
  
     0.558
Asuc_0804
PFAM: glutathionylspermidine synthase; CHAP domain containing protein; KEGG: msu:MS0671 glutathionylspermidine synthase.
  
     0.552
Asuc_1146
TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: msu:MS0947 predicted iron-dependent peroxidase.
  
  
 0.512
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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