STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1797PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: msu:MS0715 cytochrome bd-type quinol oxidase, subunit 1. (520 aa)    
Predicted Functional Partners:
Asuc_1796
TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: msu:MS0716 cytochrome bd-type quinol oxidase, subunit 2.
 
 0.999
Asuc_1097
TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: msu:MS0950 ABC-type multidrug/protein/lipid transport system, ATPase component.
 
  
 0.938
Asuc_1096
TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msu:MS0949 ABC-type multidrug/protein/lipid transport system, ATPase component.
 
  
 0.882
Asuc_1980
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: msu:MS0181 NADH dehydrogenase, FAD-containing subunit.
 
   
 0.487
Asuc_0978
TIGRFAM: nitrite reductase, copper-containing; KEGG: msu:MS0876 SufI protein; Belongs to the multicopper oxidase family.
     
 0.465
Asuc_1795
TIGRFAM: Pol-Pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: hit:NTHI0506 predicted thioesterase.
       0.412
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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