STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1888PFAM: protein of unknown function UPF0118; KEGG: msu:MS0428 PerM protein. (350 aa)    
Predicted Functional Partners:
Asuc_1889
PFAM: cytochrome b562; KEGG: msu:MS0427 hypothetical protein.
       0.545
Asuc_1890
PFAM: nitrogen regulatory protein P-II; KEGG: pmu:PM2004 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
       0.504
Asuc_1891
TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: msu:MS0425 molybdopterin biosynthesis enzymes.
       0.417
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
       0.404
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.