STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1978PFAM: protein of unknown function YGGT; KEGG: msu:MS0321 hypothetical protein. (191 aa)    
Predicted Functional Partners:
Asuc_2025
KEGG: msu:MS1921 hypothetical protein.
  
     0.736
Asuc_1977
PFAM: protein of unknown function DUF167; KEGG: msu:MS0322 hypothetical protein; Belongs to the UPF0235 family.
  
  
 0.707
Asuc_1491
PFAM: Stringent starvation protein B; KEGG: hit:NTHI1690 stringent starvation protein B.
  
     0.634
Asuc_0251
PFAM: MucB/RseB family protein; KEGG: pmu:PM1787 sigma-E factor regulatory protein.
  
     0.597
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
    0.584
bamE
SmpA/OmlA domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.575
rnfH
PFAM: protein of unknown function UPF0125; KEGG: msu:MS0558 hypothetical protein; Belongs to the UPF0125 (RnfH) family.
  
     0.571
corA
Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
       0.566
Asuc_0799
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.557
Asuc_1186
PFAM: Methyltransferase type 11; KEGG: pmu:PM0686 hypothetical E.coli.
 
     0.528
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.