Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Asuc_1978PFAM: protein of unknown function YGGT; KEGG: msu:MS0321 hypothetical protein. (191 aa)    
Predicted Functional Partners:
Asuc_1977
PFAM: protein of unknown function DUF167; KEGG: msu:MS0322 hypothetical protein; Belongs to the UPF0235 family.
  
  
 0.765
Asuc_2025
KEGG: msu:MS1921 hypothetical protein.
  
     0.736
Asuc_1491
PFAM: Stringent starvation protein B; KEGG: hit:NTHI1690 stringent starvation protein B.
  
   
 0.646
corA
Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
       0.635
Asuc_0799
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.630
Asuc_0251
PFAM: MucB/RseB family protein; KEGG: pmu:PM1787 sigma-E factor regulatory protein.
  
     0.597
bamE
SmpA/OmlA domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.575
rnfH
PFAM: protein of unknown function UPF0125; KEGG: msu:MS0558 hypothetical protein; Belongs to the UPF0125 (RnfH) family.
  
     0.571
Asuc_1186
PFAM: Methyltransferase type 11; KEGG: pmu:PM0686 hypothetical E.coli.
 
     0.527
hisS
TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: pmu:PM2011 histidyl-tRNA synthetase.
 
    0.511
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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