STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1988TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: msu:MS0331 predicted periplasmic binding protein. (316 aa)    
Predicted Functional Partners:
Asuc_1990
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: msu:MS0330 hypothetical protein.
 
  
 0.929
Asuc_1989
PFAM: UspA domain protein; KEGG: msu:MS0329 UspA protein.
 
     0.851
Asuc_1957
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sfu:Sfum_3721 TRAP transporter, 4TM/12TM fusion protein.
 
    0.816
Asuc_1987
PFAM: pseudouridine synthase; KEGG: msu:MS0231 pseudouridylate synthases, 23S RNA-specific.
       0.554
Asuc_1851
PFAM: protein of unknown function DUF112 transmembrane; KEGG: oih:OB2838 putative tricarboxylic transport membrane protein.
  
   
 0.435
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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