STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_1990TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: msu:MS0330 hypothetical protein. (880 aa)    
Predicted Functional Partners:
Asuc_1988
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: msu:MS0331 predicted periplasmic binding protein.
 
  
 0.966
Asuc_1991
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: msu:MS0331 predicted periplasmic binding protein.
 
  
 0.961
Asuc_1989
PFAM: UspA domain protein; KEGG: msu:MS0329 UspA protein.
 
    0.937
Asuc_1956
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: maq:Maqu_2063 TRAP transporter solute receptor, TAXI family.
 
  
 0.930
Asuc_1851
PFAM: protein of unknown function DUF112 transmembrane; KEGG: oih:OB2838 putative tricarboxylic transport membrane protein.
  
   
 0.733
Asuc_0142
Anaerobic c4-dicarboxylate antiporter, Dcu family; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family.
      
 0.618
Asuc_0147
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: msu:MS0541 hypothetical protein.
      
 0.618
Asuc_1163
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: oih:OB2702 C4-dicarboxylate transport system C4-dicarboxylate-binding protein.
      
 0.618
Asuc_1482
TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: msu:MS0970 di- and tricarboxylate transporters.
      
 0.618
Asuc_1578
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pmu:PM1643 unknown.
      
 0.618
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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