Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Asuc_2006 | infC | Asuc_2006 | Asuc_1449 | PFAM: protein of unknown function DUF177; KEGG: msu:MS1868 predicted metal-binding, possibly nucleic acid-binding protein. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.832 |
| Asuc_2006 | rplA | Asuc_2006 | Asuc_0044 | PFAM: protein of unknown function DUF177; KEGG: msu:MS1868 predicted metal-binding, possibly nucleic acid-binding protein. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.845 |
| Asuc_2006 | rplK | Asuc_2006 | Asuc_0045 | PFAM: protein of unknown function DUF177; KEGG: msu:MS1868 predicted metal-binding, possibly nucleic acid-binding protein. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.866 |
| Asuc_2006 | rplM | Asuc_2006 | Asuc_1494 | PFAM: protein of unknown function DUF177; KEGG: msu:MS1868 predicted metal-binding, possibly nucleic acid-binding protein. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.832 |
| Asuc_2006 | rplU | Asuc_2006 | Asuc_0917 | PFAM: protein of unknown function DUF177; KEGG: msu:MS1868 predicted metal-binding, possibly nucleic acid-binding protein. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.831 |
| Asuc_2006 | rpmF | Asuc_2006 | Asuc_2005 | PFAM: protein of unknown function DUF177; KEGG: msu:MS1868 predicted metal-binding, possibly nucleic acid-binding protein. | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: msu:MS1869 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.968 |
| Asuc_2006 | rpsB | Asuc_2006 | Asuc_0774 | PFAM: protein of unknown function DUF177; KEGG: msu:MS1868 predicted metal-binding, possibly nucleic acid-binding protein. | PFAM: ribosomal protein S2; KEGG: msu:MS1933 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.837 |
| Asuc_2006 | rpsC | Asuc_2006 | Asuc_0465 | PFAM: protein of unknown function DUF177; KEGG: msu:MS1868 predicted metal-binding, possibly nucleic acid-binding protein. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.856 |
| Asuc_2006 | rpsF | Asuc_2006 | Asuc_0761 | PFAM: protein of unknown function DUF177; KEGG: msu:MS1868 predicted metal-binding, possibly nucleic acid-binding protein. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.839 |
| Asuc_2006 | rpsP | Asuc_2006 | Asuc_0520 | PFAM: protein of unknown function DUF177; KEGG: msu:MS1868 predicted metal-binding, possibly nucleic acid-binding protein. | PFAM: ribosomal protein S16; KEGG: pmu:PM1294a 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.833 |
| infC | Asuc_2006 | Asuc_1449 | Asuc_2006 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | PFAM: protein of unknown function DUF177; KEGG: msu:MS1868 predicted metal-binding, possibly nucleic acid-binding protein. | 0.832 |
| infC | rplA | Asuc_1449 | Asuc_0044 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.896 |
| infC | rplK | Asuc_1449 | Asuc_0045 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.910 |
| infC | rplM | Asuc_1449 | Asuc_1494 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.948 |
| infC | rplU | Asuc_1449 | Asuc_0917 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.903 |
| infC | rpmF | Asuc_1449 | Asuc_2005 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: msu:MS1869 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.875 |
| infC | rpsB | Asuc_1449 | Asuc_0774 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | PFAM: ribosomal protein S2; KEGG: msu:MS1933 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.941 |
| infC | rpsC | Asuc_1449 | Asuc_0465 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.943 |
| infC | rpsF | Asuc_1449 | Asuc_0761 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.940 |
| infC | rpsP | Asuc_1449 | Asuc_0520 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | PFAM: ribosomal protein S16; KEGG: pmu:PM1294a 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.889 |
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