STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_2054PFAM: Di-haem cytochrome c peroxidase; KEGG: msu:MS0223 cytochrome c peroxidase. (467 aa)    
Predicted Functional Partners:
Asuc_2074
KEGG: vei:Veis_1858 serine/threonine-protein kinase.
  
 
 0.866
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
      
 0.728
truD
tRNA pseudouridine synthase D TruD; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
 
     0.539
Asuc_0978
TIGRFAM: nitrite reductase, copper-containing; KEGG: msu:MS0876 SufI protein; Belongs to the multicopper oxidase family.
  
  
 0.490
Asuc_2055
Putative transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: msu:MS0179 SoxR protein.
       0.448
tolB
Tol-Pal system beta propeller repeat TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
   0.417
Asuc_1467
Oligogalacturonide lyase; KEGG: msu:MS1740 hypothetical protein.
  
   0.416
Asuc_1192
PFAM: OmpW family protein; KEGG: msu:MS0740 outer membrane protein W.
   
    0.402
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.